A

Acorn NMR software
Adams, M. W.
Akke, M. 1, 2, 3
algorithms
automated
scoring
all-atom method
amino acid
type, in assignment
Anglister, J.
Anthony, J.
Aono, S.
apodization function
aromatic resonances
aromatic side chain 1, 2
ASCII data file formats
.asn files
Assign
database
defining a project
defining spectra 1, 2
library file 1, 2
matrices
optimization methods
pattern
peak picking
sequential assignment
spin system detection
two-dimensional simulated annealing
visualization tools
assigned resonance list
assignment
homonuclear 2D spectra
individual spin systems
atom specification
automated
prototype pattern detection
automated spin-system detection 1, 2

B

Banks, K. M.
Barkhuijsen
Barkhuijsen, H.
baseline correction
algorithms 1, 2
automatic 1, 2
distortions
setting fraction
baseline point entities
baseline points
adding 1, 2
DC convolution
defining 1, 2
deleting a region 1, 2
Bax 1, 2
Bax, A. 1, 2, 3, 4, 5
Bermel, W.
Billeter
Billeter, M. 1, 2
Blake, P. R.
Bloch equations
Boelens
Boelens, R.
Boucher
Boucher, W.
Bouee, W. M. M. J.
Boyd, J.
Braun, W.
Bruker Aspect console
Bruker spectrometer 1, 2, 3
Brutscher, B.
Bryant, F. O
buffers
accessing
adjusting
built-in data filters
buttons

C

Campbell-Burk, S. L.
.car files 1, 2
carbon chemical shift
Carpenter, T. A.
Case
Chazin, W. J. 1, 2
chemical shift filters
chemical shift library
chemical shifts, editing
chi square values
chi-squared value
Chylla, R. A.
clipboard
clipboard list 1, 2, 3
Clubb, R. T.
command mode, changing to
connectivity
Constantine
Constatine, K. L.
contour levels
contour plot
control panels
coordinate information
coordinates, reading into FELIX
COSY
Cox, M.
cross peak
calculating volumes
model
volume measurement
cross peak data
exporting
Crothers, D. M.
cubic spline algorithm 1, 2
cursors, correlated

D

data
ASCII file storage
categories
conversion software
exporting
filters
modelling
sharing
structures
database
contents viewer
editor
overview
de Beer, R.
deoxynucleotides
detection algorithm
dialog boxes
Dietrich
Dietrich, W.
digital filtering of data 1, 2
dipolar spin relaxation
directory structure
displaying
simultaneous data and molecules
Döbeli, H.
Dobson 1, 2
Dobson, C. M.
Domaille, P. J.
DQF-COSY
Dreyfuss, G.
Dzakula, Z.

E

Eccles
Eccles, C.
Eccleston, E.
Edwards, R. G.
Elliot, S. R.
Engels, J. W.
entry boxes
Ernst 1, 2
Ernst, R. R.
ETHERNET transfer of files
expansion area
expansion peaks
exponential linebroadening window function
exponential multiplication
exporting data
NOE restraints to Insight II
extension loops

F

Farmer
Farmer II, B. T. 1, 2
Feature list
Feigon, J.
FELIX
accessing from Insight II
customizing setup
data format
running multiple copies
Felix
program modules
Felix
capabilities
ending a session
FELIX environment
felixrc99 file
Ferguson, S. B.
Fesik S. 1, 2
Fesik, S. W.
FID, extending 1, 2
15N separated TOCSY
file formats
file types
files
.par 1, 2
parameter
FLATT baseline correction algorithm 1, 2
4D
methods
triple resonance experiments
Fourier integral transform
four-spin system
frames
closing
Freund, C.
Friedrichs, M.
Friedrichs, M. S.
fuzzy algebra
fuzzy similarities 1, 2, 3

G

Garotta, G.
Gauss/Lorentz multiplication
Gaussian
linebroadening window function
GE spectrometer
GE/Nicolet 1X80 spectrophotometers
GENET
Gentz, R.
Geppert, T.
Gershater, C. J.
gifts
directory
Gladden, L. F.
Goldfarb, V.
Gosbach, M.
graphics frames
features
layouts
Greek text
Griesenger, C.
Griesinger, C.
Gross
Gross, K. H.
Grzesiek 1, 2, 3
Grzesiek, S. 1, 2, 3
Guerlesquin, F.
Guntert 1, 2
Guntert, P. 1, 2

H

Ha-HN cross peak
Hajduk, P. 1, 2
Hamming
Hamming, R. W.
Hansen, A. P.
Hare, D. R.
Henkin, J.
heteronuclear spin system detection
Heuer, A.
Hilbert transform
Holak, T.
homonuclear 3D spectra
homonuclear experiments
Howard, J. B.

I

Ikura, M.
individual peaks, integrating
init.mac macro
initialization macro
Insight II coordinate file
integral segments
defining and deleting
saving
integrals
adjusting slope and bias
normalization
intensity plot
interspectral tolerances
IPC facility
IRMA
intensities
IRMA files
reading and displaying
iterative assignment by consensus

J

Jeol Alpha data format
JEOL spectrometer
jeol2felix executable
jump models

K

Kaiser window function
Kalbitzer, H. R.
Kaptein, R.
Keeler et al.
Kermit
keyboard shortcuts
kinked baselines 1, 2
Klee, C. B.
Kleywegt 1, 2, 3
Kleywegt, G. J.
Klinowski, J.
Knegtel, R. M. A.
Koning
Kordel, J. 1, 2
Kumaresan
Kumaresan, R.

L

Labhardt, A. M.
Lamerichs, R. M. J. N.
Larmor frequency
Laue, E. D.
Lawrence, G. M. P.
Legault
Legault, P.
Linas, M.
line fitting interface 1, 2
linear prediction 1, 2, 3
algorithm
Lorentzian broadening

M

macros
overview
sv2d
sv3d
Macura, S.
Magnuson, J. K.
Makhoul
Makhoul, J.
Mandel, A. M.
Marino
Marino, J. P.
Marion, D.
Markley, J. L. 1, 2
Massefski 1, 2
Massefski et al. 1, 2
Mazar, A. P.
Meadows, R. 1, 2
Meadows, R. P.
Medvedeva
Medvedeva, S.
menu interface
pointers
widgets
methyl rotations
Metzler, W. F.
minimum number of contacts
Model, accessing
Morelle
Morelle, N.
Mueller, L. 1, 2
Müller, L. 1, 2

N

neighbors scores
Nelson, S. J.
Nettesheim, D. G.
Neumann, M.
Ng, S.-C.
Nikonowicz, E. P.
NMR
cross peaks in Model
NMR data, incomplete
NOE
calculation 1, 2
distance restraints
matrix
multi-spin relaxation
volume restraints
NOE connectivities
NOESY 1, 2
noise, reducing
nonlinear least squares optimizations

O

Olejniczak et al.
Olejniczak, E. T.
1D data buffers
1D spectra, displaying
operating-system mode, changing to
optimizer, interrupting
option menus
Otting, G.

P

Padilla, A.
Palmer III, A. G. 1, 2, 3
.par file 1, 2
Pardi, A. 1, 2
Park, J. B.
path name, defining
pattern, residue type matching
patterns
and residue types, matching
displaying
pd.rdb file
peaks
adjusting parameters
changing functions
defining parameters
entities
integration of individual
parameter locks
setting shape
Pederson, T. M.
Peterson, R. D.
Petros, A. M.
phase correction
algorithm
applying
phasing, in real time
picking 1D peaks 1, 2
.pks files
plots
adjusting parameters
adjusting scale
rotating
translating
Plückthun, A.
polynomial
adjusting coefficients
baseline correction algorithm
potential neighbor patterns, finding
.ppm files
Prestegard, J. H.
Process1D
project
entity
manipulating 1, 2
prototype
pattern, frequencies
prototype pattern detection
prototype patterns 1, 2

R

Rance, M.
Redfield, C.
Reid, B. R.
Rejante, M. R.
Ren, H.
residue number, in assignment
resonance assignments
resonance experiments, steps
restraints, exporting to the Insight II environment
Rexroth, A.
RF pulse
ring flipping
Roman Text
Ross, A.
RPC interface
.rstrnt files 1, 2
Rudel, C. H.
runtime directories

S

Samstag, W.
saving data
Schmidt, P.
Schwalbe, H.
scores, listing 1, 2
seed region
sequence information
sequence-specific resonance assignment
sequential
assignment strategy
connectivities
probability scores
sequential assignment
setup
customizing
Shuker, S.
Simorre, J.-P.
simulated annealing
parameters
sinebell
window functions
Skelton, N. J. 1, 2
Sklenar
Sklenár, V.
sliders
Smith, L. J.
Smith, R. A. G.
socket connection
Sřrenson, O. W.
spectra
extra peaks in
spectrum
adjusting vertical scale
appearance after Fourier transformation
displaying axis
features, calculating separation 1, 2
finding data values
frequency domain commands 1, 2
matching synthetic to real
peak integration of
phase correcting 1, 2
phasing automatically
phasing with parameter settings
referencing 1, 2
saving
selecting limits
setting pivot
storing information
spike, eliminating
spin systems
delineation
detection
displaying
identifying
information
stages
stack plot
stacks
adjusting
standard deviation
Starovasnik, M. A.
Summers, M. F.
sv2d macro
sv3d macro
symmetrical spectra
systematic searching
Szalma, S.

T

3J dihedral restraints
3D
homonuclear spin system detection algorithm
triple resonance spectra 1, 2
TOCSY 1, 2, 3
trapezoidal window function
triple resonance neighbor finding algorithm
triple resonance spin system detection algorithms
Tropp
Tufts, D. W.
tuning parameters
2D
homonuclear systematic search algorithm
simulated annealing detection algorithm
systematic search
type scores

U

uninterrupted pathways
user interface widgets

V

van Ormondt, D.
Varian
Unity console
VXR
Varian spectra, importing
Varian spectrometer
VAX/VMS
Vuister, G. W.
VXR tapes

W

Wagner, G. 1, 2
Walsh, C. T
Wand, A. J.
Wang, A. C.
Wang, E.
Weisemann, R.
Widmer, H.
window functions
adjusting parameters 1, 2
exponential linebroadening
Gaussian linebroadening
Kaiser
list of
sinebell
trapezoidal
Wittekind, M. 1, 2
workspaces
Workstation requirements
Wuthrich 1, 2, 3
Wuthrich, K. 1, 2, 3, 4, 5

X

X32 console
.Xdefaults file
X-PLOR coordinate file
Xu, R. X.

Y

Yip

Z

zero filling
Zhu, G.
Zolnai,. Z.

Index