Index

15N-HMQC-NOE spectrum 1, 2

15N-HMQC-TOCSY spectrum 1, 2

15N-HSQC spectrum 1, 2

1D spectra

viewing and analyzing

A

additional reading

analzing

1D spectra

annotation

assigning the buildup

assigning the scalar peak

assigning, frequencies

assignments, displaying

Autoscreen

Autoscreen Experiments Table

B

baseline correction 1, 2, 3

Blake

C

calculating the chemical shift index

chemical shift index, calculating

clusters

contour level

control spectrum, processing 1, 2

coordinates, redefining

cross peak footprints

using database to list

cross peaks

assigning

D

D2 dimension, transforming

database

checking file structure

creating a new file

generating 2D cross peaks

heirarchy

modifying schema

passing data into and out of

querying for entity information

reading in

selecting

setting up 1, 2

submitting a query

using to change the value of an element 1, 2

using to load the value of an element

utilities tutorial

viewing entity contents

viewing entity with tables

writing from

DC offset, removing

display parameters, changing

displaying, molecules and scores in Insight II

Domaille P. J.

DQF-COSY

DQF-COSY spectrum

E

editing scoring results, manually

entities, building

experiments

adding to project

defining new

exporting scoring results

F

FID

FIF

frequencies

frequency clipboard 1, 2

frequency collapse tolerance

H

Handel T.

heteronuclear NOE's, evaluating

HNCACB spectrum 1, 2

hnRNP C

I

Insight II, displaying molecules and scores in

L

library

accessing and defining

defining

M

matrix

Modelfree input, generating

Mueller L.

N

neighbor detection, verifying result

neighbor searches, performing

NMR spectrum assignment

NOE peaks, checking

NOESY 2D NMR

NOESY spectrum

O

one-dimensional data processing

advanced

P

PAMPAS

pattern

patterns 1, 2

connecting

generating sequence-specific assignments for

matching against known AA sequence

scoring 1, 2

peak assignments, generating automatically

Peak Displacement Table

peak heights, measuring

peak picking

in assignment procedure

peaks

coloring based on prototype patterns

deleting

reading in 1, 2, 3

phasing adjustment

plot

contour

processing a control spectrum 1, 2

Processing all spectra automatically

processing test spectra

project

adding experiments to

protein/DNA library

protein-DNA library

prototype pattern

collecting

copying directly to a spin system

copying to a spin system

copying to clipboard

correcting

creating tile plot

detection 1, 2, 3

visualizing 1, 2

writing collection to file

prototype pattern detection

Q

QSAR study

R

regions of interest

related books

restraints

defining and generating

redefining

ROIs (regions of interest)

S

SAR by NMR analysis

scalar peak, assigning

scoring

analyzing results

exporting results

manually editing results

patterns

setting up parameters

test spectra

scoring patterns

sequence-specific assignment 1, 2

sequence-specific assignments 1, 2

generating 1, 2, 3

sequential assignment, visualizing

sequential connectivities

setup of scoring parameters

signal/noise ratio, evaluating

spectra

selecting 1, 2

viewing and analyzing

spectra, processing all automatically

spectrum-specific shifts

adjusting

setting

spectrum-specific tolerances

spin system, adding to patterns

spreadsheet, viewing entity with

stretches, using in assignment

strip plot 1, 2

strip plots, using

T

test spectra

processing

scoring

3D peak picking

three-dimensional data, transforming

TOCSY

2D cross peaks, using database to generate

2D data, processing

typographical conventions

V

viewing

1D spectra

viewing clusters

volumes, calculating

W

workstation requirements

Z

Zn-rubredoxin